t1003-read-tree-prefix.sh: use the $( ... ) construct for command substitution

t1003-read-tree-prefix.sh: use the $( ... ) construct for command substitution

The Git CodingGuidelines prefer the $(...) construct for command
substitution instead of using the backquotes `...`.

The backquoted form is the traditional method for command
substitution, and is supported by POSIX.  However, all but the
simplest uses become complicated quickly.  In particular, embedded
command substitutions and/or the use of double quotes require
careful escaping with the backslash character.

The patch was generated by:

for _f in $(find . -name "*.sh")
do
   sed -i 's@`\(.*\)`@$(\1)@g' ${_f}
done

and then carefully proof-read.

Signed-off-by: Elia Pinto <redacted>
Reviewed-by: Matthieu Moy <redacted>
Signed-off-by: Junio C Hamano <redacted>